Topological-autoencoders github
Ripser / ripserStar 187
Ripser: efficient computation of VietorisRips persistence barcodes persistent-homology topological-data-analysis computational-topology
scikit-tda / ripser.pyStar 165
A Lean Persistent Homology Library for Python data-science topology notebook cython scikit-learn doi trouble persistent-homology topological-data-analysis tda homology ripser
GUDHI / gudhi-develStar 140
Open [python - SimplexTree] SimplexTree.copy()mglisse commentedNov 6, 2019 It could be useful to have a way to clone a simplex tree, more efficiently than a loop on get_filtration doing inserts (we have a copy constructor in C++). Show
Read more enhancement good first issue Open [python - SimplexTree] SimplexTree.copy()mglisse commentedNov 6, 2019 It could be useful to have a way to clone a simplex tree, more efficiently than a loop on get_filtration doing inserts (we have a copy constructor in C++). Read more enhancement good first issue Pseudomanifold / AlephStar 79
A library for exploring persistent homology machine-learning c-plus-plus-11 persistence persistent-homology topological-data-analysis
BorgwardtLab / topological-autoencodersStar 60
Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt. autoencoder persistent-homology topological-data-analysis tda
BorgwardtLab / P-WLStar 51
A Persistent WeisfeilerLehman Procedure for Graph Classification machine-learning persistent-homology topological-data-analysis graph-kernels weisfeiler-lehman graph-classification
rivetTDA / rivetStar 43
RIVET is a tool for Topological Data Analysis, in particular two-parameter persistent homology. data-science data-visualization algebraic-topology persistent-homology topological-data-analysis
c-hofer / torchphStar 32
The essence of my research, distilled for reusability. Enjoy! deep-learning gpu pytorch persistent-homology topological-data-analysis differentiable-persistent-homology
mtsch / Ripserer.jlStar 25
Flexible and efficient persistent homology computation. topology julia persistent-homology topological-data-analysis tda homology ripser cohomology
rrrlw / TDAstatsStar 23
R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details. visualization data-science ggplot2 cran r topology pipeline r-package joss persistent-homology topological-data-analysis tda homology ripser r-packages homology-computation homology-calculations topology-visualization
nebneuron / Simplicial.jlStar 22
A package for various computations with simplicial complexes, combinatorial codes, directed complexes and their filtrations. simplicial-complexes persistent-homology tda homology-computation combinatorial-codes directed-complexes polar-complex codewords dowker-complexes
BorgwardtLab / Neural-PersistenceStar 21
Code for the paper 'Neural Persistence: A Complexity Measure for Deep Neural Networks Using Algebraic Topology' machine-learning deep-learning neural-networks algebraic-topology persistent-homology iclr iclr2019
scikit-tda / pervectStar 17
Vectorization of persistence diagrams and approximate Wasserstein distance python topology vectorizer persistent-homology topological-data-analysis wasserstein-metric
rodrgo / OpenPHStar 14
Parallel reduction of boundary matrices for Persistent Homology with CUDA parallel-computing cuda gpu-computing persistent-homology topological-data-analysis numerical-computation
salimandre / unsupervised-image-segmentation-persistent-homologyStar 13
Unsupervised image segmentation by applying topological data analysis techniques. image-segmentation unsupervised-learning persistent-homology tda persistence-diagrams gudhi traversal-algorithm rips-vietoris-complexes covering-tree
scikit-tda / cechmateStar 13
Custom filtration constructors for Python phat persistent-homology tda filtration persistence-diagrams custom-filtrations boundary-matrices
shizuo-kaji / CubicalRipser_3dimStar 10
Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D (voxel) arrays persistent-homology tda
BorgwardtLab / fMRI_Cubical_PersistenceStar 10
Code of our NeurIPS 2020 publication 'Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence' persistent-homology topological-data-analysis tda neurips cubical-complex cubical-complexes neurips-2020
Pseudomanifold / pyperStar 8
Python-based persistent homology algorithms persistent-homology topological-data-analysis
mtsch / Ripser.jlStar 8
Simple Ripser wrapper in Julia julia persistent-homology topological-data-analysis tda computational-topology homology
rrrlw / ggtdaStar 7
ggplot2 extension to visualize persistent homology. visualization ggplot2 cran r barcode tidyverse rstats persistent-homology topological-data-analysis tda ggplot-extension ggplot2-geom ggplot2-stat persistence-data vietoris-complex
giotto-ai / pyflagserStar 7
Open Feature request: Allow (read only) access to the directed flag complex via python 16 flomlo commentedDec 18, 2020 MotivationThe implementation of the data structure needed for the directed flag complex seems to be quite memory efficient in the flagser code. The same holds true for the generation of the directed flag complex. Read more enhancement good first issue Open Feature request: Allow (read only) access to the directed flag complex via python 16 flomlo commentedDec 18, 2020 MotivationThe implementation of the data structure needed for the directed flag complex seems to be quite memory efficient in the flagser code. The same holds true for the generation of the directed flag complex. Read more enhancement good first issue shizuo-kaji / TutorialTopologicalDataAnalysisStar 6
Tutorial on Topological Data Analysis nlp tutorial jupyter-notebook persistent-homology tda
trneedham / IntroductionToTopologicalDataAnalysisStar 5
persistent-homology topological-data-analysis tda
shizuo-kaji / HomologyCNNStar 5
Homology assisted CNN for image classification cnn image-classification persistent-homology tda
Pseudomanifold / TMLStar 5
Experiments in topological machine learning machine-learning topology machine-learning-algorithms persistent-homology
Pseudomanifold / enchiridion-tdaStar 4
An enchiridion for instructing mortals in the hidden arts of topological data analysis topology data-analysis persistent-homology graph-kernels
gjkoplik / pers-hom-examplesStar 4
A placeholder repo to hold widgets for my Towards Data Science persistent homology medium article. persistent-homology tda
mtsch / PersistenceDiagrams.jlStar 4
Persistence Diagrams in Julia persistent-homology persistence-diagrams bottleneck-distance wasserstein-distance
rrrlw / visual-tdaStar 3
R code associated with preprint proposing flat persistence diagram for better visualization of persistent homology. r data-visualization data-visualisation persistent-homology topological-data-analysis
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